This study aimed at screening strains of Bacillus sp.capable of degrading cellulose and identifying the species of purpose strains.8 dung samples of giant panda were treated in water bath at high temperature.Congo red decolorizing ring method was used to screen the strains before DNS method to test the highest enzyme activity.The results showed that 8 strains of 126 strains isolated in dung of giant panda had highly efficient cellulose-degrading capability.Through morphological,physiological and biochemical analysis and the sequence analysis of 16S rDNA gene,8 strains were identified.The strains are all Bacillus sp.,including 1 Bacillus subtilis(2N-14),1 B.axarquienis(2N-12),2 B.siamensis(Y-6、Y-10),and 4 B.methylotrophicus(2N-10、2L-9、2L-24、3X-10).The test shows that there were many strains(Bacillus sp.)capable of cellulose degradation in the dung of giant panda.The giant panda-derived B.axarquienis,B.siamensis were isolated and cultivated for the first time,which enriched the research of giant panda intestinal flora and provided new sources of strains for efficient production of cellulose. Exploring the efficiency of- 2016年 河北大学学报(自然科学版) 2016第36卷 第6期 Journal of Hebei University(Natural Science Edition) Vol.36 No.6DOI:10.3969/j.issn.1000-1565.2016.06.010华北地区圈养大熊猫粪便中产纤维素酶芽孢杆菌菌株的分离与鉴定武红敏,郭威,郭晓军,周贤,朱宝成(河北农业大学 生命科学学院,河北 保定 071001)摘 要:为分离筛选大熊猫肠道中具有纤维素降解能力的芽孢杆菌菌株,首先对8份大熊猫粪便进行高温水浴处理,利用刚果红平板法进行初筛和复筛,DNS法测定酶活力.结果分离出126株菌株,其中8株菌株纤维素降解能力较强.结合形态特征、生理生化特征和16S rDNA序列分析,鉴定8个菌株均属于芽孢杆菌属,其中1株枯草芽孢杆菌(Bacillus subtilis),1株阿萨尔基芽孢杆菌(B.axarquienis),2株西姆芽孢杆菌(B.siamensis),4株甲基营养型芽孢杆菌(B.methylotrophicus).实验表明大熊猫肠道中存在多种降解纤维素的芽孢杆菌,其中新发现的有大熊猫源的阿萨尔基芽孢杆菌和西姆芽孢杆菌,丰富了大熊猫肠道菌群的研究,并为高效生产纤维素酶提供新的菌种来源.探究了大熊猫消化道内高效的纤维素降解菌,有利于实现高纤维类饲料资源化利用.关键词:大熊猫;粪便;芽孢杆菌;纤维素酶中图分类号:S858.9 文献标志码:A 文章编号:1000-1565(2016)06-0623-12Isolation and identification of Bacillus capable of degradingcellulose from the feces captive giant panda of in north ChinaWU Hongmin,GUO Wei,GUO Xiaojun,ZHOU Xian,ZHU Baocheng(College of Life Sciences,Agriculture University of Hebei,Baoding 071001,China)Abstract:This study aimed at screening strains of Bacillus sp.capable of degrading cellulose and identifying the species of purpose strains.8 dung samples of giant panda were treated in water bath at high temperature.Congo red decolorizing ring method was used to screen the strains before DNS method to test the highest enzyme activity.The results showed that 8 strains of 126 strains isolated in dung of giant panda had highly efficient cellulose-degrading capability.Through morphological,physiological and biochemical analysis and the sequence analysis of 16S rDNA gene,8 strains were identified.The strains are all Bacillus sp.,including 1 Bacillus subtilis(2N-14),1 B.axarquienis(2N-12),2 B.siamensis(Y-6、Y-10),and 4 B.methylotrophicus(2N-10、2L-9、2L-24、3X-10).The test shows that there were many strains(Bacillus sp.)capable of cellulose degradation in the dung of giant panda.The giant panda-derived B.axarquienis,B.siamensis were isolated and cultivated for the first time,which enriched the research of giant panda intestinal flora and provided new sources of strains for efficient production of cellulose. Exploring the efficiency of- 收稿日期:2015-12-22 基金项目:河北省科技计划项目(12236606);保定市科学研究与发展计划项目(15ZN017) 第一作者:武红敏(1990—),女,河北藁城人,河北农业大学在读硕士研究生.E-mail:873659445@qq.com 通信作者:朱宝成(1962—),男,河北沧州人,河北农业大学教授,博士生导师,主要从事农牧微生物应用技术研究. E-mail:zhu2222@126.com河北大学学报(自然科学版) 第36卷第6期武红敏等:华北地区圈养大熊猫粪便中产纤维素酶芽孢杆菌菌株的分离与鉴定cellulose degradation bacteria in the digestive tract of panda is beneficial for the resource utilization of high fiber feed.
[1] 娄治平,赖仞,苗海霞.生物多样性保护与生物资源永续利用[J].中国科学院院刊,2012,27(3):359-365.DOI:10.3969/j.issn.1000-3045.2012.03.015. LOU Z P,LAI R,MIAO H X.Conservation of biodiversity and sustainable utilization of biological resources[J].Bulletin of Chinese Academy of Sciences,2012,27(3):359-365.DOI:10.3969/j.issn.1000-3045.2012.03.015.
[2] LI R,FAN W,TIAN G,et al.The sequence and de novo assembly of the giant panda genome[J].Nature,2010,463(7279):311-317.DOI:10.1038/nature 08696.
[3] 王海娟,潘渠.大熊猫肠道正常菌群降解纤维素的机制[J].中国微生态学杂志,2014,26(2):225-228.DOI:10.13381/j.cnkicjm.201402028. WANG H J,PAN Q.The mechanism of cellulose metabolism by the giant panda gut microbiome[J].Chinese Journal of Microecology,2014,26(2):225-228.DOI:10.13381/j.cnkicjm.201402028.
[4] 谭志,鲍楠,赖翼,等.野外放归大熊猫和圈养大熊猫肠道正常菌群的研究[J].四川大学学报(自然科学版),2004,41(6):1276-1279.DOI:10.3969/j.issn.0490-6756.2004.06.039. TAN Z,BAO N,LAI Y,et al.The study on the normal intestinal microflora of the giant panda returned to wild and the giant panda in captivity[J].Journal of Sichuan University(Natural Science Edition),2004,41(6):1276-1279.DOI:10.3969/j.issn.0490-6756.2004.06.039.
[5] 鲁海峰,魏桂芳,李仲逵,等.ERIC-PCR分子杂交技术分析大熊猫肠道菌群结构[J].中国微生态学杂志,2005,17(2):81-84.DOI:10.3969/j.issn.1005-376X.2005.02.001. LU H F,WEI G F,LI Z K,et al.ERIC-PCR based fingerprinting and molecular hybridization to analyze the characteristics of intestinal microflora of giant panda[J].Chinese Journal of Microecology,2005,17(2):81-84.DOI:10.3969/j.issn.1005-376X.2005.02.001.
[6] 马清义,任建设,史怀平.人工饲养大熊猫消化道正常菌群分离与鉴定研究[J].北京农业,2009,21:56-57.DOI:10.3969/j.issn.1000-6966.2009.21.015. MA Q Y,REN J S,SHI H P.Isolation and identification of intestinal flora in giant panda[J].Beijing Agriculture,2009,21:56-57.DOI:10.3969/j.issn.1000-6966.2009.21.015.
[7] 马海玲.基于动物粪便的纤维素分解菌筛选及分解纤维素能力研究[D].北京:中国地质大学,2012. MA H L.Screening cellulose degradating microorganisms from animal wastes and studying of the capable of degradation cellulose[D].Beijing:China University of Geosciences,2012.
[8] WEI F,WANG X,WU Q.The giant panda gut microbiome[J].Trends Microbiol,2015,23(8):450-452.DOI:10.1016/j.tim.2015.06.004.
[9] 祝小,王振华,潘康成,等.产纤维素酶芽孢杆菌筛选及发酵条件的初步研究[J].现代农业科技,2006,11:122-124.DOI:10.3969/j.issn.1007-5739.2006.21.082.
[10] 陈丽燕,张光祥,黄春萍,等.两株高产纤维素酶细菌的筛选、鉴定及酶学特性[J].微生物学通报,2011,38(4):531-538.DOI:10.13344/j.microbiol.china.2011.04.017. CHEN L Y,ZHANG G X,HUANG C P,et al.Isolation,identification and enzymatic characteristics of cellulose-producing strains with high cellulase activity[J].Microbiology China,2011,38(4):531-538.DOI:10.13344/j.microbiol.china.2011.04.017.
[11] 朱顺妮,王闻,亓伟,等.纤维素酶的研究进展[J].新能源进展,2013,1(1):45-52.DOI:10.3969/j.issn.2095-560X.2013.01.005. ZHU S N,WANG W,QI W,et al.Research progress in cellulase[J].Advances in New and Renewable Energy,2013,1(1):45-52.DOI:10.3969/j.issn.2095-560X.2013.01.005.
[12] 朱亚静.鹅肠道纤维素酶和蛋白酶活性分析以及纤维素降解菌的筛选[D].南宁:广西大学,2013. ZHU Y J.Analysis of cellulase and protease and activity of goose intestine and screen on bacteria capable of degrading[D].Nanning:Guangxi University,2013.
[13] 胡艳平,王磊,曹平华,等.纤维素酶产生菌的筛选、其酶学性质及对饲料粗纤维降解效果的研究[J].饲料工业,2013,34(8):21-27.DOI:10.3969/j.issn.1001-991X.2013.08.005. HU Y P,WANG L,CAO P H,et al.Study of screening of a strain producing cellulase,its enzymatic properties and the degradation rate of crude fiber in the feed[J].Feed Industry,2013,34(8):21-27.DOI:10.3969/j.issn.1001-991X.2013.08.005.
[14] 吴敏峰,耿秀蓉,祝小,等.产纤维素酶芽孢杆菌的分离鉴定[J].饲料工业,2006,27(20):21-24.DOI:10.3969/j.issn.1001-991X.2006.20.007.
[15] 东秀珠,蔡妙英.常见细菌系统鉴定手册[M].北京:北京科学出版社,2001.
[16] B.施特马赫.酶的测定方法[M].钱嘉渊译.北京:中国轻工业出版社,1992:103-177.
[17] J.G 霍尔特主编.简明第八版伯杰细菌鉴定手册[M].刘复今编译.济南:山东大学出版社,1988.
[18] KIM S B,YOON J H,KIM H,et al.A phylogenetic analysis of the genus saccharomonospora conducted with 16S rRNA gene sequences[J].International Journal of Systematic Bacteriology,1995,45(2):351-356.
[19] RAINEY F A,WARD-RAINEY N,KROPPENSTEDT R M,et al.The genus nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage:proposal of nocardiopsaceae fam[J].International Journal of Systematic Bacteriology,1996,46(4):1088-1092.DOI:10.1099/00207713-46-4-1088.
[20] HALL B G.Building phylogenetic trees from molecular data with MEGA[J].Molecular Biology and Evolution,2013,30(5):1229-1235.DOI:10.1093/molbev/mst012.
[21] 荣华,邱成书,胡国全,等.一株大熊猫肠道厌氧纤维素菌的分离鉴定、系统发育分析及生物学特性的研究[J].应用与环境生物学报,2006,12(2):239-242.DOI:10.3321/j.issn:1006-687X.2006.02.021. RONG H,QIU C S,HU G Q,et al.Isolation of cellulolytic anaerobic strain from giant panda's intestines and its biological characteristics and phylogeny[J].Chinese Journal of Applied & Environmental Biology,2006,12(2):239-242.DOI:10.3321/j.issn:1006-687X.2006.02.021.
[22] 曹涵文,吴珑韬,甘乾福,等.熊猫粪便中纤维素降解菌的筛选与鉴定[J].家畜生态学报,2015,06:19-25.DOI:10.3969/j.issn.1673-1182.2015.06.005. CAO H W,WU L T,GAN Q F,et al.Isolation and identification of cellulose-degradation bacteria from panda dung[J].Journal of Domestic Animal Ecology,2015,06:19-25.DOI:10.3969/j.issn.1673-1182.2015.06.005.
[23] 樊程,李双江,李成磊,等.大熊猫肠道纤维素分解菌的分离鉴定及产酶性质[J].微生物学报,2012,52(9):1113-1121.DOI:10.13343/j.cnki.wsxb.2012.09.004. FAN C,LI S J,LI C L,et al.Isolation,identification and cellulase production of a cellulolytic bacterium from intestines of giant panda[J].Acta Microbiologica Sinica,2012,52(9):1113-1121.DOI:10.13343/j.cnki.wsxb.2012.09.004.
[24] 周潇潇,何廷美,彭广能,等.大熊猫肠道芽孢杆菌的分离鉴定及其抗逆性研究[J].中国兽医科学,2013,43(11):1115-1121. ZHOU X X,HE T M,PENG G N,et al.Isolation,identification and resistance analysis of 7 Bacillus strains from the intestinal tract of giant panda[J].Chinese Veterinary Science,2013,43(11):1115-1121.
[25] 赵珊,吕雯婷,刘杰,等.1株大熊猫肠道纤维素降解菌的分离鉴定及其酶学性质[J].微生物学杂志,2015,35(1):73-78.DOI:10.3969 / j.issn.1005-7021.2015.01.014. ZHAO S,LÜ W T,LIU J,et al.Isolation of cellulose Degradable-Bacteria from Giant Panda's intestines and its enzymatic characterization[J].Journal of Microbiology,2015,35(1):73-78.DOI:10.3969/j.issn.1005-7021.2015.01.014.
[26] RUIZ GARCIA C,QUESADA E,MARTINEZ CHECA F,et al.Bacillus axarquiensis sp.nov.and Bacillus malacitensis sp.nov.,isolated from river-mouth sediments in southern Spain[J].Int J Syst Evol Microbiol,2005,55(3):1279-1285.DOI:10.1099/ijs.0.63567-0.
[27] 冯志珍,李金岭,陈太春,等.番茄疫霉根腐病拮抗细菌 FC12-05 的筛选、鉴定及其抑菌活性初探[J].西北农林科技大学学报(自然科学版),2012,40(4):107-114.DOI:10.13207/j.cnki.jnwafu.2012.04.021. FENG Z Z,LI J L,CHEN T C,et al.Screening,identification and antibacterial activity of antagonistic bacteria FC12-05 against phytophthora root rot of tomato[J].Journal of Northwest A & F University(Natural Science Edition),2012,40(4):107-114.DOI:10.13207/j.cnki.jnwafu.2012.04.021.
[28] 纪学芳,师俊玲,张锦华.柠檬苦素降解菌的分离筛选与分类鉴定[J].食品科学,2011,32(15):177-181. JI X F,SHI J L,ZHANG J H.Isolation and identification of limonin-degrading strains isolated from fermented grains during vinegar fermentation[J].Food Science,2011,32(15):177-181.