Genetic analysis and mapping of a heading date mutant jt1242-14b in Setaria italica

  • WANG Chunfang ,
  • QI Dongmei ,
  • SHI Shenkui ,
  • ZHANG Wendian ,
  • ZHI Hui ,
  • DIAO Xianmin
Expand
  • 1.College of Biological and Food Science, Hebei Normal University for Nationalities, Chengde 067000, China; 2.Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China

Received date: 2022-04-26

  Online published: 2023-02-22

Abstract

To identify the target genes controlling heading date, an early heading mutant jt1242-14b was identified from the ethyl methyl sulfonate(EMS)induced mutant library of the foxtail millet variety Yugu1. Compared with Yugu1, jt1242-14b showed an early heading date, thinner stem, and narrow and short leaves. Genetic analysis showed that the mutant was controlled by a recessive gene. Genetic mapping of the mutant gene was conducted from segregating population of jt1242-14b/SSR41. The gene was mapped in an interval of 4 447 kb between the molecular marker In4746 and In9-11 on chromosome 9. Finally, jt1242-14b was caused by a mutation in PHYB gene revealed by sequencing, so PHYB could be the target gene of the early heading mutant. This study provided a material foundation for cloning and functional research of PHYB in millet early heading genes.

Cite this article

WANG Chunfang , QI Dongmei , SHI Shenkui , ZHANG Wendian , ZHI Hui , DIAO Xianmin . Genetic analysis and mapping of a heading date mutant jt1242-14b in Setaria italica[J]. Journal of Hebei University(Natural Science Edition), 2023 , 43(1) : 87 -94 . DOI: 10.3969/j.issn.1000-1565.2023.01.013

References

[1] YANG X Y, WAN Z W, PERRY L,et al. Early millet use in northern China[J]. Proc Natl Acad Sci USA, 2012, 109(10):3726-3730. DOI:10.1073/pnas.1115430109.
[2] 贾冠清,刁现民.谷子(Setaria italica(L.)P.Beauv.)作为功能基因组研究模式植物的发展现状及趋势[J].生命科学, 2017, 29(3): 292-301. DOI:10.13376/j.cbls/2017039.
[3] JIA X P, ZHANG Z B, LIU Y H, et al. Development and genetic mapping of SSR markers in foxtail millet[Setaria italica(L.)P. Beauv] [J]. Theor Appl Genet, 2009, 118(4): 821-829. DOI:10.1007/s00122-008-0942-9.
[4] BENNETZEN J L, SCHMUTZ J, WANG H, et al. Reference genome sequence of the model plant Setaria[J]. Nat Biotechnol, 2012, 30(6): 555-561. DOI:10.1038/nbt.2196.
[5] ZHANG G Y, LIU X, QUAN Z W, et al. Genome sequence of foxtail millet(Setaria italica)provides insights into grass evolution and biofuel potential[J]. Nat Biotechnol, 2012, 30(6): 549-554. DOI:10.1038/nbt.2195.
[6] MAURO-HERRERA M, WANG X W, BARRBIER H, et al. Genetic control and comparative genomic analysis of flowering time in Setaria(Poaceae)[J]. G3(Bethesda), 2013, 3(2): 283-295. DOI:10.1534/g3.112.005207.
[7] DOUST A N, LUKENS L, OLSEN K M, et al. Beyond the single gene: how epistasis and gene-by-environment effects influence crop domestication[J]. PNAS, 2014, 111(17): 6178-6183. DOI:10.1073/pnas.1308940110.
[8] 曾莲,张华,柳絮,等.水稻抽穗期基因Hd7m的定位及遗传分析[J].山东农业科学, 2015, 47(1): 10-13.DOI:10.14083/j.issn.1001-4942.2015.01.003.
[9] 李允振,黄永禄,谢旭阳,等.水稻抽穗期基因EHD8的遗传分析及精细定位[J].中国科技论文, 2017, 12(12): 1336-1340. DOI:10.3969/j.issn.2095-2783.2017.12.003.
[10] 葛永申.水稻高代回交导入系群体产量相关性状的QTL定位及抽穗期基因DTH6的鉴定[D].扬州:扬州大学, 2017.
[11] 刘国祥.小麦抽穗期基因TaHdM605精细作图[D].北京:中国农业科学院, 2015.
[12] 王燕.高粱抽穗期基因Ma1和Ma3的分子进化及抽穗期的QTL分析[D].北京:中国农业大学, 2015.
[13] 杨莉芳.谷子雄性不育基因SiMS1的精细定位[D].北京:中国农业科学院, 2013.
[14] 孙楠.谷子棍棒穗突变体T1340的性状鉴定及突变基因定位[D].太原:山西大学, 2015.
[15] 李雯,智慧,张硕,等.谷子Si-SP1小穗突变基因的遗传分析和定位[J].植物遗传资源学报, 2015, 16(3): 581-587. DOI:10.13430/j.cnki.jpgr.2015.03.022.
[16] 张浩.谷子穗部突变体sidts1的鉴定及候选基因功能分析[D].太原:山西大学, 2017.
[17] 相吉山.谷子穗发育调控基因图位克隆与功能分析[D].兰州:甘肃农业大学, 2017.
[18] MICHELMORE R W, PARAN I, KESSELI R V. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations[J]. PNAS, 1991, 88(21): 9828-9832. DOI:10.1073/pnas.88.21.9828.
[19] MCCOUCH S R, KOCHERT G, YU Z H, et al. Molecular mapping of rice chromosomes[J]. Theor Appl Genet, 1988, 76(6): 815-829. DOI:10.1007/BF00273666.
[20] ZHANG Q, SHEN B Z, DAI X K, et al. Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice[J]. PNAS, 1994, 91(18): 8675-8679. DOI:10.1073/pnas.91.18.8675.
[21] ISHIKAWA R, AOKI M, KUROTANI K I, et al. Phytochrome B regulates Heading date 1(Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice[J]. Mol Genet Genom, 2011, 285(6): 461-470. DOI:10.1007/s00438-011-0621-4.
[22] SHEEHAN M J, KENNEDY L M, COSTICH D E, et al. Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize[J]. Plant J, 2007, 49(2): 338-353. DOI:10.1111/j.1365-313X.2006.02962.x.
[23] YANG S S, MURPHY R L, MORISHIGE D T, et al. Sorghum phytochrome B inhibits flowering in long days by activating expression of SbPRR37 and SbGHD7, repressors of SbEHD1, SbCN8 and SbCN12[J]. PLoS One, 2014, 9(8): e105352. DOI:10.1371/journal.pone.0105352.
[24] 马朝峰,戴思兰.光受体介导信号转导调控植物开花研究进展[J].植物学报, 2019, 54(1): 9-22. DOI:10.11983/CBB18147.
[25] 贾小平,张博,何占祥,等.谷子光敏色素基因光周期、非生物胁迫响应特性及关键自然变异位点鉴定[J].生物工程学报, 2022, 38(5): 1929-1945. DOI:10.13345/j.cjb.210648.
[26] 贾小平,张博,李剑峰,等.谷子SSR标记与光周期敏感性的关联分析[J].华北农学报, 2019, 34(1): 89 -96. DOI:10.7668/hbnxb.201750672.
[27] 贾小平,袁玺垒,李剑峰,等.不同光温条件谷子光温互作模式研究及SiCCT基因表达分析[J].作物学报, 2020, 46(7): 1052-1062. DOI:10.3724/SP.J.1006.2020.94144. (
Outlines

/

〈 〉